Rapid Exploration of Configuration Space with Diffusion-Map-Directed Molecular Dynamics

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Rapid Mapping and Exploration of Configuration Space

We describe a GPU-based computational platform for sixdimensional configuration mapping, which is the description of the configuration space of rigid motions in terms of collision and contact constraints. The platform supports a wide range of computations in design and manufacturing, including three and six dimensional configuration space obstacle computations, Minkowski sums and differences, p...

متن کامل

Fast recovery of free energy landscapes via diffusion-map-directed molecular dynamics.

The reaction pathways characterizing macromolecular systems of biological interest are associated with high free energy barriers. Resorting to the standard all-atom molecular dynamics (MD) to explore such critical regions may be inappropriate as the time needed to observe the relevant transitions can be remarkably long. In this paper, we present a new method called Extended Diffusion-Map-direct...

متن کامل

Parallel Global Aircraft Configuration Design Space Exploration

– The preliminary design space exploration for large, interdisciplinary engineering problems is often a difficult and time-consuming task. General techniques are needed that efficiently and methodically search the design space. This work focuses on the use of parallel load balancing techniques integrated with a global optimizer to reduce the computational time of the design space exploration. T...

متن کامل

PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics

MOTIVATION Mathematical models of biological systems often have a large number of parameters whose combinational variations can yield distinct qualitative behaviors. Since it is intractable to examine all possible combinations of parameters for non-trivial biological pathways, it is required to have a systematic strategy to explore the parameter space in a computational way so that dynamic beha...

متن کامل

User-directed Exploration of Mining Space with Multiple Attributes

There has been a growing interest in mining frequent itemsets in relational data with multiple attributes. A key step in this approach is to select a set of attributes that group data into transactions and a separate set of attributes that labels data into items. Unsupervised and unrestricted mining, however, is stymied by the combinatorial complexity and the quantity of patterns as the number ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: The Journal of Physical Chemistry B

سال: 2013

ISSN: 1520-6106,1520-5207

DOI: 10.1021/jp401911h